Details
Major Description
Some components in an npm repo will persistently throw ConcurrentModificationException on trying to delete them. This seems to affect all versions of a component with a semver-patch range (every 1.1.x version of a component may be affected but 1.2.x will not be).
Using nexus 3.0.1-01 inside a docker container loosely based off the official sonatype nexus3 dockerfile. Specifically, https://download.sonatype.com/nexus/3/nexus-3.0.1-01-unix.tar.gz
The issue seems to be related to how the component is stored, as once it occurs it will persist across reboots. There seems to be no way to get rid of it once it occurs, although I haven't tried dumping the repo entirely.
If the offending package is published to another npm repo on the same server, it usually is not affected, so I doubt it is related to the content of the package.
I seem to recall that some of the affected package version ranges used to delete just fine, but I can't be sure of that.
The issue happens fairly often to me, about 1 in every 5 semver-patch ranges seem to be affected.
My workflow may be causing this: I have redeploy off, but tend to play fast and loose when developing, and will commonly delete a semver-patch version if I discover a bug soon after publishing it. Additionally, I tend to scan through the codebase and remove earlier patch versions that are no longer in use.
2016-10-05 18:55:43,378+0000 org.sonatype.nexus.extdirect.internal.ExtDirectServlet - Failed to invoke action method: coreui_Component.deleteComponent, java-method: org.sonatype.nexus.coreui.ComponentComponent.deleteComponent java.util.ConcurrentModificationException: null at java.util.LinkedHashMap$LinkedHashIterator.nextNode(LinkedHashMap.java:719) [na:1.8.0_102] at java.util.LinkedHashMap$LinkedEntryIterator.next(LinkedHashMap.java:752) [na:1.8.0_102] at java.util.LinkedHashMap$LinkedEntryIterator.next(LinkedHashMap.java:750) [na:1.8.0_102] at com.sonatype.nexus.repository.npm.internal.NpmHostedComponentMaintenanceImpl.deleteTarball(NpmHostedComponentMaintenanceImpl.java:114) [na:na] at com.sonatype.nexus.repository.npm.internal.NpmHostedComponentMaintenanceImpl.deleteAssetTx(NpmHostedComponentMaintenanceImpl.java:75) [na:na] at java.lang.Iterable.forEach(Iterable.java:75) [na:1.8.0_102] at com.sonatype.nexus.repository.npm.internal.NpmHostedComponentMaintenanceImpl.deleteComponentTx(NpmHostedComponentMaintenanceImpl.java:49) [na:na] at org.sonatype.nexus.transaction.TransactionalWrapper.proceedWithTransaction(TransactionalWrapper.java:54) [na:na] at org.sonatype.nexus.transaction.TransactionInterceptor.invoke(TransactionInterceptor.java:53) [na:na] at org.sonatype.nexus.repository.storage.DefaultComponentMaintenanceImpl.deleteComponent(DefaultComponentMaintenanceImpl.java:47) [na:na] at org.sonatype.nexus.repository.storage.ComponentMaintenance$deleteComponent.call(Unknown Source) [na:na] at org.sonatype.nexus.coreui.ComponentComponent$_deleteComponent_closure1.doCall(ComponentComponent.groovy:305) [na:na] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [na:1.8.0_102] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [na:1.8.0_102] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [na:1.8.0_102] at java.lang.reflect.Method.invoke(Method.java:498) [na:1.8.0_102] at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:93) [na:na] at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:325) [na:na] at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:294) [na:na] at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1019) [na:na] at org.codehaus.groovy.runtime.callsite.PogoMetaClassSite.call(PogoMetaClassSite.java:42) [na:na] at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:133) [na:na] at org.sonatype.nexus.coreui.ComponentComponent.deleteEntity(ComponentComponent.groovy:324) [na:na] at org.sonatype.nexus.coreui.ComponentComponent$deleteEntity.callCurrent(Unknown Source) [na:na] at org.sonatype.nexus.coreui.ComponentComponent.deleteComponent(ComponentComponent.groovy:304) [na:na] at org.sonatype.nexus.validation.internal.ValidationInterceptor.invoke(ValidationInterceptor.java:53) [na:na] at org.apache.shiro.guice.aop.AopAllianceMethodInvocationAdapter.proceed(AopAllianceMethodInvocationAdapter.java:49) [na:na] at org.apache.shiro.authz.aop.AuthorizingAnnotationMethodInterceptor.invoke(AuthorizingAnnotationMethodInterceptor.java:68) [na:na] at org.apache.shiro.guice.aop.AopAllianceMethodInterceptorAdapter.invoke(AopAllianceMethodInterceptorAdapter.java:36) [na:na] at sun.reflect.GeneratedMethodAccessor475.invoke(Unknown Source) [na:na] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [na:1.8.0_102] at java.lang.reflect.Method.invoke(Method.java:498) [na:1.8.0_102] at com.softwarementors.extjs.djn.router.dispatcher.DispatcherBase.invokeJavaMethod(DispatcherBase.java:142) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.router.dispatcher.DispatcherBase.invokeMethod(DispatcherBase.java:133) [org.sonatype.nexus.extdirect:3.0.1.01] at org.sonatype.nexus.extdirect.internal.ExtDirectServlet$3.invokeMethod(ExtDirectServlet.java:221) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.router.dispatcher.DispatcherBase.dispatch(DispatcherBase.java:63) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.router.processor.standard.StandardRequestProcessorBase.dispatchStandardMethod(StandardRequestProcessorBase.java:73) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.router.processor.standard.json.JsonRequestProcessor.processIndividualRequest(JsonRequestProcessor.java:502) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.router.processor.standard.json.JsonRequestProcessor.processIndividualRequestsInThisThread(JsonRequestProcessor.java:150) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.router.processor.standard.json.JsonRequestProcessor.process(JsonRequestProcessor.java:133) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.router.RequestRouter.processJsonRequest(RequestRouter.java:83) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.servlet.DirectJNgineServlet.processRequest(DirectJNgineServlet.java:617) [org.sonatype.nexus.extdirect:3.0.1.01] at com.softwarementors.extjs.djn.servlet.DirectJNgineServlet.doPost(DirectJNgineServlet.java:580) [org.sonatype.nexus.extdirect:3.0.1.01] at org.sonatype.nexus.extdirect.internal.ExtDirectServlet.doPost(ExtDirectServlet.java:127) [org.sonatype.nexus.extdirect:3.0.1.01] at javax.servlet.http.HttpServlet.service(HttpServlet.java:707) [javax.servlet-api:3.1.0] at javax.servlet.http.HttpServlet.service(HttpServlet.java:790) [javax.servlet-api:3.1.0] at com.google.inject.servlet.ServletDefinition.doServiceImpl(ServletDefinition.java:287) [com.google.inject:4.0.0] at com.google.inject.servlet.ServletDefinition.doService(ServletDefinition.java:277) [com.google.inject:4.0.0] at com.google.inject.servlet.ServletDefinition.service(ServletDefinition.java:182) [com.google.inject:4.0.0] at com.google.inject.servlet.DynamicServletPipeline.service(DynamicServletPipeline.java:71) [com.google.inject:4.0.0] at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:85) [com.google.inject:4.0.0] at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:112) [org.apache.shiro.web:1.2.4] at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:82) [com.google.inject:4.0.0] at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:112) [org.apache.shiro.web:1.2.4] at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:82) [com.google.inject:4.0.0] at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:61) [org.apache.shiro.web:1.2.4] at org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:108) [org.apache.shiro.web:1.2.4] at org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:137) [org.apache.shiro.web:1.2.4] at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) [org.apache.shiro.web:1.2.4] at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:66) [org.apache.shiro.web:1.2.4] at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:449) [org.apache.shiro.web:1.2.4] at org.sonatype.nexus.security.SecurityFilter.executeChain(SecurityFilter.java:85) [org.sonatype.nexus.security:3.0.1.01] at org.apache.shiro.web.servlet.AbstractShiroFilter$1.call(AbstractShiroFilter.java:365) [org.apache.shiro.web:1.2.4] at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:90) [org.apache.shiro.core:1.2.4] at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:83) [org.apache.shiro.core:1.2.4] at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:383) [org.apache.shiro.core:1.2.4] at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:362) [org.apache.shiro.web:1.2.4] at org.sonatype.nexus.security.SecurityFilter.doFilterInternal(SecurityFilter.java:101) [org.sonatype.nexus.security:3.0.1.01] at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:125) [org.apache.shiro.web:1.2.4] at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:82) [com.google.inject:4.0.0] at com.codahale.metrics.servlet.AbstractInstrumentedFilter.doFilter(AbstractInstrumentedFilter.java:97) [com.codahale.metrics.servlet:3.0.2] at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:82) [com.google.inject:4.0.0] at org.sonatype.nexus.internal.web.ErrorPageFilter.doFilter(ErrorPageFilter.java:63) [org.sonatype.nexus.base:3.0.1.01] at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:82) [com.google.inject:4.0.0] at org.sonatype.nexus.internal.web.EnvironmentFilter.doFilter(EnvironmentFilter.java:97) [org.sonatype.nexus.base:3.0.1.01] at com.google.inject.servlet.FilterChainInvocation.doFilter(FilterChainInvocation.java:82) [com.google.inject:4.0.0] at com.google.inject.servlet.DynamicFilterPipeline.dispatch(DynamicFilterPipeline.java:104) [com.google.inject:4.0.0] at com.google.inject.servlet.GuiceFilter$1.call(GuiceFilter.java:133) [com.google.inject:4.0.0] at com.google.inject.servlet.GuiceFilter$1.call(GuiceFilter.java:130) [com.google.inject:4.0.0] at com.google.inject.servlet.GuiceFilter$Context.call(GuiceFilter.java:203) [com.google.inject:4.0.0] at com.google.inject.servlet.GuiceFilter.doFilter(GuiceFilter.java:130) [com.google.inject:4.0.0] at org.sonatype.nexus.bootstrap.osgi.DelegatingFilter.doFilter(DelegatingFilter.java:73) [org.sonatype.nexus.bootstrap:3.0.1.01] at org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1668) [org.eclipse.jetty.servlet:9.3.7.v20160115] at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:581) [org.eclipse.jetty.servlet:9.3.7.v20160115] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548) [org.eclipse.jetty.security:9.3.7.v20160115] at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1158) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:511) [org.eclipse.jetty.servlet:9.3.7.v20160115] at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1090) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119) [org.eclipse.jetty.server:9.3.7.v20160115] at com.codahale.metrics.jetty9.InstrumentedHandler.handle(InstrumentedHandler.java:175) [com.codahale.metrics.jetty9:3.0.2] at org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:109) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:119) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.server.Server.handle(Server.java:517) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:308) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:242) [org.eclipse.jetty.server:9.3.7.v20160115] at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273) [org.eclipse.jetty.io:9.3.7.v20160115] at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95) [org.eclipse.jetty.io:9.3.7.v20160115] at org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:75) [org.eclipse.jetty.io:9.3.7.v20160115] at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceAndRun(ExecuteProduceConsume.java:213) [org.eclipse.jetty.util:9.3.7.v20160115] at org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:147) [org.eclipse.jetty.util:9.3.7.v20160115] at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:654) [org.eclipse.jetty.util:9.3.7.v20160115] at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:572) [org.eclipse.jetty.util:9.3.7.v20160115] at java.lang.Thread.run(Thread.java:745) [na:1.8.0_102]
